WorkflowHub shadow
OverviewThis project contains shadow workflows corresponding to those in WorkflowHub /projects/1
SEEK ID: https://sandbox8.fairdomhub.org/projects/2
Public web page: Not specified
Organisms: No Organisms specified
IBISBA PALs: No PALs for this Project
Project created: 16th Sep 2022
Related items
Projects: Example TNA project, WorkflowHub shadow, Default Project
Institutions: Default Institution
Projects: WorkflowHub shadow
Institutions: Default Institution
A bot user for synchronization
Projects: Default Project, WorkflowHub shadow, Example TNA project, Hidden, Project for Finn
Institutions: Default Institution, WUR, UNIMAN
This is a shadow of https://workflowhub.eu/workflows/22?version=1
Given a set of pathways generated by RetroPath2.0, this workflow informs the user as to the theoretically best performing ones based on four criteria: FBA, thermodynamic feasibility, length of the pathway, and reaction rule score.
This is a shadow of https://workflowhub.eu/workflows/23?version=1
This workflow converts the top-ranking predicted pathways from the "RetroSynthesis" and "Pathway Analysis" workflows to plasmids intended to be expressed in the specified organism
This is a shadow of https://workflowhub.eu/workflows/24?version=1
Generate possible metabolic routes for the production of a target molecule in an organism of choice
This is a shadow of https://workflowhub.eu/workflows/25?version=1
The workflow runs the RetroSynthesis algorithm to generate a collection of heterologous pathways in a host organism of choice, converts them to SBML files, performs analysis on the pathways to then rank the theoretical best performing ones.
This is a shadow of https://workflowhub.eu/workflows/41?version=2
This workflow has been created as part of Demonstrator 6 of EOSC-Life WP3 and is focused on reusing publicly available RNAi screens to gain insights into the nucleolus biology. The workflow downloads images from the Image Data Resource (IDR), performs object segmentation (of nuclei and nucleoli) and feature extraction of the images and objects identified.
