Workflows

This is a shadow of https://workflowhub.eu/workflows/22?version=1

Given a set of pathways generated by RetroPath2.0, this workflow informs the user as to the theoretically best performing ones based on four criteria: FBA, thermodynamic feasibility, length of the pathway, and reaction rule score.

This is a shadow of https://workflowhub.eu/workflows/23?version=1

This workflow converts the top-ranking predicted pathways from the "RetroSynthesis" and "Pathway Analysis" workflows to plasmids intended to be expressed in the specified organism

This is a shadow of https://workflowhub.eu/workflows/24?version=1

Generate possible metabolic routes for the production of a target molecule in an organism of choice

This is a shadow of https://workflowhub.eu/workflows/25?version=1

The workflow runs the RetroSynthesis algorithm to generate a collection of heterologous pathways in a host organism of choice, converts them to SBML files, performs analysis on the pathways to then rank the theoretical best performing ones.

This is a shadow of https://workflowhub.eu/workflows/41?version=2

This workflow has been created as part of Demonstrator 6 of EOSC-Life WP3 and is focused on reusing publicly available RNAi screens to gain insights into the nucleolus biology. The workflow downloads images from the Image Data Resource (IDR), performs object segmentation (of nuclei and nucleoli) and feature extraction of the images and objects identified.

This is a shadow of https://workflowhub.eu/workflows/99?version=1

Galaxy version of pre-processing of reads from COVID-19 samples. QC + human read cleaning Based on https://github.com/Finn-Lab/Metagen-FastQC/blob/master/metagen-fastqc.sh

This is a shadow of https://workflowhub.eu/workflows/115?version=1

Workflow for tracking objects in Cell Profiler: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/object-tracking-using-cell-profiler/tutorial.html